adegenet: truenames – R documentation

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truenames

Restore true labels of an object

Description

The function truenames returns some elements of an object (genind or genpop) using true names (as opposed to generic labels) for individuals, markers, alleles, and population.

Important: as of adegenet_2.0-0, these functions are deprecated as true labels are used whenever possible. Please use the function tab instead.

Usage

## S4 method for signature 'genind'
truenames(x)
## S4 method for signature 'genpop'
truenames(x)

Arguments

`x`	a genind or a genpop object

Value

If x\$pop is empty (NULL), a matrix similar to the x\$tab slot but with true labels.

If x\$pop exists, a list with this matrix (\$tab) and a population vector with true names (\$pop).

Author(s)

Thibaut Jombart t.jombart@imperial.ac.uk

Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)

Initial release

truenames

Description

Usage

Arguments

Value

Author(s)

See Also

adegenet

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