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web

Functions to access online resources for adegenet


Description

These functions simply open websites or documents available online providing resources for adegenet.

Usage

adegenetWeb()

adegenetTutorial(
  which = c("basics", "spca", "dapc", "genomics", "strata", "snapclust")
)

adegenetIssues()

Arguments

which

a character string indicating which tutorial to open (see details)

Details

  • adegenetWeb opens adegenet's website

  • adegenetTutorial opens adegenet tutorials

  • adegenetIssues opens the issue page on github; this is used to report a bug or post a feature request.

Available tutorials are:

  • 'basics': general introduction to adegenet; covers basic data structures, import/export, handling, and a number of population genetics methods

  • 'spca': spatial genetic structures using the spatial Principal Component Analysis

  • 'dapc': population structure using the Discriminant Analysis of Principal Components

  • 'genomics': handling large genome-wide SNP data using adegenet

  • 'strata': introduction to hierarchical population structure in adegenet

  • 'snapclust': introduction to fast maximum-likelihood genetic clustering using snapclust


adegenet

Exploratory Analysis of Genetic and Genomic Data

v2.1.3
GPL (>= 2)
Authors
Thibaut Jombart [aut] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maié [ctb], Libor Morkovsky [ctb], Ismail Ahmed [ctb], Anne Cori [ctb], Federico Calboli [ctb], RJ Ewing [ctb], Frédéric Michaud [ctb], Rebecca DeCamp [ctb], Alexandre Courtiol [ctb] (<https://orcid.org/0000-0003-0637-2959>)
Initial release

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