plot intensities using 'pairs'
Plot intensities using the function 'pairs'
## S3 method for class 'AffyBatch'
pairs(x, panel=points, ..., transfo=I, main=NULL, oma=NULL,
font.main = par("font.main"),
cex.main = par("cex.main"), cex.labels = NULL,
lower.panel=panel, upper.panel=NULL, diag.panel=NULL,
font.labels = 1, row1attop = TRUE, gap = 1)x |
an |
panel |
a function to produce a plot (see |
... |
extra parameters for the 'panel' function. |
transfo |
a function to transform the intensity values before generating the plot. 'log' and 'log2' are popular choices. |
main |
title for the plot |
oma |
see 'oma' in |
font.main |
see |
cex.main |
see |
cex.labels |
see |
lower.panel |
a function to produce the plots in the lower
triangle (see |
upper.panel |
a function to produce the plots in the upper
triangle (see |
diag.panel |
a function to produce the plots in the diagonal
(see |
font.labels |
see |
row1attop |
see |
gap |
see |
Plots with several chips can represent zillions of points. They require a lot of memory and can be very slow to be displayed. You may want to try to split of the plots, or to plot them in a device like 'png' or 'jpeg'.
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.