affy: whatcdf – R documentation

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Documentation

affy

whatcdf

Find which CDF corresponds

Description

Find which kind of CDF corresponds to a CEL file.

Usage

whatcdf(filename, compress = getOption("BioC")$affy$compress.cel)

Arguments

`filename`	a '.CEL' file name.
`compress`	logical (file compressed or not).

Details

Information concerning the corresponding CDF file seems to be found in CEL files. This allows us to try to link CDF information automatically.

Value

a character with the name of the CDF.

Rafael A. Irizarry <rafa@ds.harvard.edu>, Laurent Gautier <lgautier@gmail.com>, Benjamin Milo Bolstad <bmb@bmbolstad.com>, and Crispin Miller <cmiller@picr.man.ac.uk> with contributions from Magnus Astrand <Magnus.Astrand@astrazeneca.com>, Leslie M. Cope <cope@mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad Halling <challing@agilixcorp.com>, Wolfgang Huber, James MacDonald <jmacdon@u.washington.edu>, Benjamin I. P. Rubinstein, Christopher Workman <workman@cbs.dtu.dk>, John Zhang

Initial release