Check factor levels
Check factor levels before log-RSS calculation
check_factors(model, x1, x2)
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x2 |
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This function is meant for internal use by log_rss()
and is
not meant to be called by the user.
## Not run: #Load data data("amt_fisher") # Prepare data for RSF rsf_data <- amt_fisher %>% filter(name == "Lupe") %>% make_track(x_, y_, t_) %>% random_points() %>% extract_covariates(amt_fisher_covar$elevation) %>% extract_covariates(amt_fisher_covar$popden) %>% extract_covariates(amt_fisher_covar$landuse) %>% mutate(lu = factor(landuse)) # Fit RSF without factor m1 <- rsf_data %>% fit_rsf(case_ ~ elevation + popden) # data.frame of x1s x1 <- data.frame(elevation = seq(90, 120, length.out = 100), popden = mean(rsf_data$popden)) # data.frame of x2 (note factor levels should be same as model data) x2 <- data.frame(elevation = mean(rsf_data$elevation), popden = mean(rsf_data$popden)) # Function should return NULL (no factors to check) check_factors(m1$model, x1, x2) # Fit RSF with factor m2 <- rsf_data %>% fit_rsf(case_ ~ lu + elevation + popden) # data.frame of x1s x1 <- data.frame(lu = factor(50, levels = levels(rsf_data$lu)), elevation = seq(90, 120, length.out = 100), popden = mean(rsf_data$popden)) # data.frame of x2 (note factor levels should be same as model data) x2 <- data.frame(lu = factor(50, levels = levels(rsf_data$lu)), elevation = mean(rsf_data$elevation), popden = mean(rsf_data$popden)) # Function should return NULL (no discrepancies) check_factors(m2, x1, x2) # Now misspecify factor for x1 x1 <- data.frame(lu = factor(50), elevation = seq(90, 120, length.out = 100), popden = mean(rsf_data$popden)) # Function should return informative errors regarding data vs x1 and x1 vs x2 check_factors(m2$model, x1, x2) # Also misspecify factor for x2 x2 <- data.frame(lu = factor(50), elevation = mean(rsf_data$elevation), popden = mean(rsf_data$popden)) # Function should return informative errors regarding data vs x1 and data vs x2 check_factors(m2$model, x1, x2) ## End(Not run)
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