batchtools: doJobCollection – R documentation

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doJobCollection

Execute Jobs of a JobCollection

Executes every job in a JobCollection. This function is intended to be called on the slave.

doJobCollection(jc, output = NULL)

`jc`	[`JobCollection`] Either an object of class “JobCollection” as returned by `makeJobCollection` or a string with the path to file containing a “JobCollection” as RDS file (as stored by `submitJobs`).
`output`	[`character(1)`] Path to a file to write the output to. Defaults to `NULL` which means that output is written to the active `sink`. Do not set this if your scheduler redirects output to a log file.

[character(1)]: Hash of the JobCollection executed.

tmp = makeRegistry(file.dir = NA, make.default = FALSE)
batchMap(identity, 1:2, reg = tmp)
jc = makeJobCollection(1:2, reg = tmp)
doJobCollection(jc)

Tools for Computation on Batch Systems

v0.9.15

LGPL-3

Authors

Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Bernd Bischl [aut], Dirk Surmann [ctb] (<https://orcid.org/0000-0003-0873-137X>)

Initial release