Obtain An SSE Sequence Vector From A PDB Object
Results are similar to that returned by stride(pdb)$sse and dssp(pdb)$sse.
pdb2sse(pdb, verbose = TRUE)
pdb |
an object of class |
verbose |
logical, if TRUE warnings and other messages will be printed. |
call for its effects.
a character vector indicating SSE elements for each amino acide residue. The 'names' attribute of the vector contains 'resno', 'chain', 'insert', and 'SSE segment number', seperated by the character '_'.
Barry Grant & Xin-Qiu Yao
#PDB server connection required - testing excluded
pdb <- read.pdb("1a7l")
sse <- pdb2sse(pdb)
ssePlease choose more modern alternatives, such as Google Chrome or Mozilla Firefox.