Summarize and Print Features of a cna Network Graph
These functions attempt to summarize and print a cna network graph to the terminal in a human readable form.
## S3 method for class 'cna' print(x, ...) ## S3 method for class 'cna' summary(object, verbose=TRUE, ...)
x |
A cna network and community object as obtained from the function ‘cna’. |
object |
A cna network and community object as obtained from the function ‘cna’. |
verbose |
Logical, if TRUE a community summary table is prited to screen. |
... |
Extra arguments passed to the ‘write.table’ function. |
Simple summary and print methods for protein dynamic networks.
The function summary.cna returns a list with the following components:
id |
A community number/identifier vector with an element for each community. |
size |
A numeric community size vector, with elements giving the number of nodes within each community. |
members |
A lst detailing the nodes within each community. |
Guido Scarabelli and Barry Grant
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
if (!requireNamespace("igraph", quietly = TRUE)) {
message('Need igraph installed to run this example')
} else {
## Load the correlation network
attach(hivp)
## Read the starting PDB file to determine atom correspondence
pdbfile <- system.file("examples/hivp.pdb", package="bio3d")
pdb <- read.pdb(pdbfile)
## Examine network composition
print(net)
x<- summary(net)
x$members[[2]]
detach(hivp)
}Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.