bio3d: store.atom – R documentation

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store.atom

Store all-atom data from a PDB object

Not intended for public usage

store.atom(pdb=NULL)

pdb

A pdb object as obtained from read.pdb

This function was requested by a user and has not been extensively tested. Hence it is not yet recommended for public usage.

Returns a matrix of all-atom data. If pdb=NULL, returns the default atom names to be stored.

This function is still in development and is NOT part of the offical bio3d package

Barry Grant

Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.

## Not run: 
pdb <- read.pdb( get.pdb("5p21", URLonly=TRUE) )
a <- store.atom(pdb)
a[,,1:2]

## End(Not run)

Biological Structure Analysis

v2.4-2

GPL (>= 2)

Authors

Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut]

Initial release