bio3d: uniprot – R documentation

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uniprot

Fetch UniProt Entry Data.

Fetch protein sequence and functional information from the UniProt database.

uniprot(accid)

accid

UniProt accession id.

This is a basic utility function for downloading information from the UniProt database. UniProt contains protein sequence and functional information.

Returns a list object with the following components:

`accession`	a character vector with UniProt accession id's.
`name`	abbreviated name.
`fullName`	full recommended protein name.
`shortName`	short protein name.
`sequence`	protein sequence.
`gene`	gene names.
`organism`	organism.
`taxon`	taxonomic lineage.

Lars Skjaerven

Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.

See also the UniProt web-site for more information:
https://www.uniprot.org/.

## Not run: 
# UNIPROT server connection required - testing excluded

prot <- uniprot('PH4H_HUMAN')
prot$fullName
prot$sequence

## End(Not run)

Biological Structure Analysis

v2.4-2

GPL (>= 2)

Authors

Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut]

Initial release