Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

PAC

Potential for Apparent Competition


Description

Quantifies, for each pair of lower trophic level species, the potential for showing apparent competition with another species, mediated through the higher trophic level.

Usage

PAC(web)

Arguments

web

A host-parasitoid network (or alike), where the entries represent the sum of parasitoids emerging from the interactions between parasitoid and host (i.e. number of interactions * number of parasitoid individuals emerging from each host). Only if there is only one parasitoid per host this web will be the same as that used in all other calculations in this package!

Details

Calculates the potential for apparent competition (Holt 1977), following the formula given in Müller et al. (1999) and Morris et al. (2005). See also Morris et al. (2004) for an experimental test.

Value

Returns a k x k matrix with entries d.ij, where k is the number of species in the lower trophic level and i and j are lower trophic level species. The matrix represents the effect of column species on row species. Diagonal entries are “apparent intraspecific competition”.

Note

The idea is that in host-parasitoid networks one host also affects other hosts by the number of parasitoid that hatch from it and are thus added to the pool of parasitoids. An abundant, large host can (involuntarily) contribute many parasitoids to the pool, thus also increasing the parasitoid burden of other hosts. This looks like competition between the two hosts, while in fact it is mediated through the other trophic level.

Whether this concept can be usefully applied to mutualist networks (such as flower visitation networks, aka pollination webs) is still under-investigated. The study of Carvalheiro et al. (2014) provide an example for constructive use in mutualistic networks.

Author(s)

References

Carvalheiro, L.G., Biesmeijer, J.C., Benadi, G., Fründ, J., Stang, M., Bartomeus, I., Kaiser-Bunbury, C.N., Baude, M., Gomes, S.I.F., Merckx, V., Baldock, K.C.R., Bennett, A.T.D., Boada, R., Bommarco, R., Cartar, R., Chacoff, N., Dänhardt, J., Dicks, L. V., Dormann, C.F., Ekroos, J., Henson, K.S.E., Holzschuh, A., Junker, R.R., Lopezaraiza-Mikel, M., Memmott, J., Montero-Castaño, A., Nelson, I.L., Petanidou, T., Power, E.F., Rundlöf, M., Smith, H.G., Stout, J.C., Temitope, K., Tscharntke, T., Tscheulin, T., Vilà, M. & Kunin, W.E. 2014 The potential for indirect effects between co-flowering plants via shared pollinators depends on resource abundance, accessibility and relatedness. Ecology Letters 17, 1389–1399.

Holt, R. D. 1977 Predation, apparent competition and the structure of prey communities. Theoretical Population Biology 12, 197–229.

Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2004 Experimental evidence for apparent competition in a tropical forest food web. Nature 428, 310–313.

Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2005 Apparent competition and insect community structure: towards a spatial perspective. Annales Zoologica Fennici 42, 449–462.

Müller, C. B., Adriaanse, I. C. T., Belshaw, R. and Godfray, H. C. J. 1999 The structure of an aphid-parasitoid community. Journal of Animal Ecology 68, 346–370

Examples

data(Safariland)
PAC(Safariland)

bipartite

Visualising Bipartite Networks and Calculating Some (Ecological) Indices

v2.16
GPL
Authors
Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with additional code from Stephen Beckett, Mariano Devoto, Gabriel Felix, Jose Iriondo, Tove Opsahl, Rafael Pinheiro, Rouven Strauss and Diego Vazquez, also based on C-code developed by Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel Rodriguez-Girones
Initial release
2021-02-08

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.