Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off error free sum and cumsum, etc.
Package: | caTools |
Version: | 1.17 |
Date: | April 21, 2014 |
Depends: | R (>= 2.2.0), bitops |
Suggests: | MASS, rpart |
License: | GPL=3 |
Index:
LogitBoost LogitBoost Classification Algorithm predict.LogitBoost Prediction Based on LogitBoost Algorithm base64encode Convert R vectors to/from the Base64 format colAUC Column-wise Area Under ROC Curve (AUC) combs All Combinations of k Elements from Vector v read.ENVI Read and Write Binary Data in ENVI Format read.gif Read and Write Images in GIF format runmean Mean of a Moving Window runmin Minimum and Maximum of Moving Windows runquantile Quantile of Moving Window runmad Median Absolute Deviation of Moving Windows runsd Standard Deviation of Moving Windows sample.split Split Data into Test and Train Set sumexact Basic Sum Operations without Round-off Errors trapz Trapezoid Rule Numerical Integration
Jarek Tuszynski <jaroslaw.w.tuszynski@saic.com>
# GIF image read & write write.gif( volcano, "volcano.gif", col=terrain.colors, flip=TRUE, scale="always", comment="Maunga Whau Volcano") y = read.gif("volcano.gif", verbose=TRUE, flip=TRUE) image(y$image, col=y$col, main=y$comment, asp=1) file.remove("volcano.gif") # test runmin, runmax and runmed k=25; n=200; x = rnorm(n,sd=30) + abs(seq(n)-n/4) col = c("black", "red", "green", "brown", "blue", "magenta", "cyan") plot(x, col=col[1], main = "Moving Window Analysis Functions (window size=25)") lines(runmin (x,k), col=col[2]) lines(runmed (x,k), col=col[3]) lines(runmean(x,k), col=col[4]) lines(runmax (x,k), col=col[5]) legend(0,.9*n, c("data", "runmin", "runmed", "runmean", "runmax"), col=col, lty=1 ) # sum vs. sumexact x = c(1, 1e20, 1e40, -1e40, -1e20, -1) a = sum(x); print(a) b = sumexact(x); print(b)
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