calibrate: bplot – R documentation

Pricing

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

Get Started for Free

Documentation

calibrate

bplot

General function for making biplots

Description

Function bplot creates biplots on the basis matrices of row and column markers.

Usage

bplot(Fr,G,rowlab=rownames(Fr),collab=rownames(G),qlt=rep(1,nrow(Fr)),
refaxis=TRUE,ahead=T,xl=NULL,yl=NULL,frame=F,qltlim=0,rowch=19,
colch=19,qltvar=NULL,rowcolor="red",colcolor="blue",rowmark=TRUE,
colmark=TRUE,rowarrow=FALSE,colarrow=TRUE,markrowlab=TRUE,
markcollab=TRUE,xlab="",ylab="",cex.rowlab=1,cex.rowdot=0.75,
cex.collab=1,cex.coldot=0.75,cex.axis=0.75,lwd=1,arrowangle=10,...)

Arguments

`Fr`	matrix with coordinates of the row markers.
`G`	matrix with coordinates of the column markers.
`rowlab`	vector with labels for the rows.
`collab`	vector with labels for the columns.
`qlt`	goodness of fit of the rows.
`refaxis`	draw coordinate system `refaxis=TRUE` or not.
`ahead`	put a head on the vectors `ahead=TRUE` or not.
`xl`	limits for the x-axis.
`yl`	limits for the y-axis.
`frame`	draw a box around the plot `frame=TRUE` or not.
`qltlim`	draw only the vectors with a goodness of fit larger than `qltlim`.
`rowch`	character used for the row markers.
`colch`	character used for the column markers.
`qltvar`	vector with the goodness of fit of each variable.
`rowcolor`	colour used for the row markers.
`colcolor`	colour used for the column markers.
`rowmark`	show row markers (`rowmark=TRUE`) or not.
`colmark`	show column markers (`colmark=TRUE`) or not.
`rowarrow`	draw vectors from the origin to the row markers (`rowarrow=TRUE`) or not.
`colarrow`	draw vectors from the origin to the column markers (`colarrow=TRUE`) or not.
`markrowlab`	depict row marker labels (`rowlab=TRUE`) or not.
`markcollab`	depict column marker labels (`collab=TRUE`) or not.
`xlab`	a label for the x-axis.
`ylab`	a label for the y-axis.
`cex.rowlab`	expansion factor for the row labels.
`cex.rowdot`	expansion factor for the row markers.
`cex.collab`	expansion factor for the column labels.
`cex.coldot`	expansion factor for the column markers.
`cex.axis`	expansion factor for the axis.
`lwd`	line width for biplot vectors.
`arrowangle`	angle for the edges of the arrowhead.
`...`	extra arguments for plot.

Value

None. The function produces a graphic.

Author(s)

Jan Graffelman (jan.graffelman@upc.edu)

Examples

set.seed(123)
X <- matrix(runif(40),byrow=TRUE,ncol=4)
colnames(X) <- paste("X",1:ncol(X),sep="")
out.pca <- princomp(X,cor=TRUE)
Fp <- out.pca$scores
Gs <- as.matrix(unclass(out.pca$loadings))
bplot(Fp,Gs,colch=NA)

calibrate

Calibration of Scatterplot and Biplot Axes

v1.7.7

GPL-2

Authors

Jan Graffelman <jan.graffelman@upc.edu>

Initial release

2020-06-18

bplot

Description

Usage

Arguments

Value

Author(s)

Examples

calibrate

We don't support your browser anymore