caper

Conservation status of British birds (Thomas 2008)

Example dataset for the caper package

Anova and AIC tables for 'pgls' models.

Datasets used for benchmarking caper

Comparative analysis using the brunch algorithm.

The 'caic' S3 object class and methods

Anova and model checking methods for independent contrast models.

Diagnostic tools for independent contrasts models

Comparative analysis of phylogenetics and evolution in R (caper)

Create a clade matrix from a phylogeny

Identify tips descended from a node

Comparative dataset creation

Comparative analysis using the crunch algorithm.

Imbalance statistics using Fusco and Cronk's method.

Example dataset for Fusco imbalance calculations

Tree simulation with traits.

Comparative analysis using independent contrasts on species richness data.

Calculate and bootstrap phylogenetic diversity measurements.

Example dataset for the CAIC package

Phylogenetic generalized linear models

Generic model methods for 'pgls' models.

Likelihood profiles and confidence intervals for 'pgls' models.

Calculates the phylogenetic D statistic

Calculates the phylogenetic D statistic across clades within a phylogeny

Diagnostic plots for 'pgls' models.

Example dataset for the caper package

Summarize a crunch, brunch or macrocaic analysis

The syrphidae dataset of Katzourakis et al. 2001

Create a 2D or 3D variance-covariance matrix from a phylogeny