Add genomic axes
Add genomic axes
circos.genomicAxis(
h = "top",
major.at = NULL,
labels = NULL,
major.by = NULL,
tickLabelsStartFromZero = TRUE,
labels.cex = 0.4*par("cex"),
sector.index = get.current.sector.index(),
track.index = get.current.track.index(),
...)h |
Position of the axes. "top" or "bottom". |
major.at |
Major breaks. If |
labels |
labels corresponding to |
major.by |
Increment of major ticks. It is calculated automatically if the value is not set (about every 10 degrees there is a major tick). |
tickLabelsStartFromZero |
Whether axis tick labels start from 0? This will only affect the axis labels while not affect x-values in cells. |
labels.cex |
The font size for the axis tick labels. |
sector.index |
Index for the sector |
track.index |
Index for the track |
... |
Other arguments pass to |
It assigns proper tick labels under genomic coordinate.
circos.initializeWithIdeogram(chromosome.index = paste0("chr", 1:4), plotType = NULL)
circos.track(ylim = c(0, 1), panel.fun = function(x, y) circos.genomicAxis())
circos.track(ylim = c(0, 1), track.height = 0.1)
circos.track(track.index = get.current.track.index(), panel.fun = function(x, y) {
circos.genomicAxis(h = "bottom", direction = "inside")
})
circos.clear()Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.