circlize: circos.genomicIdeogram – R documentation

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circos.genomicIdeogram

Add an ideogram track

Description

Add an ideogram track

Usage

circos.genomicIdeogram(
    cytoband = system.file(package = "circlize", "extdata", "cytoBand.txt"),
    species = NULL,
    track.height = mm_h(2),
    track.margin = circos.par("track.margin"))

Arguments

`cytoband`	A data frame or a file path, pass to `read.cytoband`.
`species`	Abbreviations of the genome, pass to `read.cytoband`.
`track.height`	Height of the ideogram track.
`track.margin`	Margins for the track.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

circos.initializeWithIdeogram(plotType = c("labels", "axis"))
circos.track(ylim = c(0, 1))
circos.genomicIdeogram() # put ideogram as the third track

circlize

Circular Visualization

v0.4.12

MIT + file LICENSE

Authors

Zuguang Gu

Initial release

2021-1-8