coda: plot.mcmc – R documentation

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plot.mcmc

Summary plots of mcmc objects

plot.mcmc summarizes an mcmc or mcmc.list object with a trace of the sampled output and a density estimate for each variable in the chain.

## S3 method for class 'mcmc'
plot(x, trace = TRUE, density = TRUE, smooth = FALSE, bwf,
	auto.layout = TRUE, ask = dev.interactive(), ...)

`x`	an object of class `mcmc` or `mcmc.list`
`trace`	Plot trace of each variable
`density`	Plot density estimate of each variable
`smooth`	Draw a smooth line through trace plots
`bwf`	Bandwidth function for density plots
`auto.layout`	Automatically generate output format
`ask`	Prompt user before each page of plots
`...`	Further arguments

Martyn Plummer