Bayesian colocalisation analysis using data.frames
Bayesian colocalisation analysis using data.frames
coloc.abf.datasets(df1, df2, snps = intersect(setdiff(colnames(df1), response1), setdiff(colnames(df2), response2)), response1 = "Y", response2 = "Y", ...)
df1 |
dataset 1 |
df2 |
dataset 2 |
snps |
col.names for snps |
response1 |
col.name for response in dataset 1 |
response2 |
col.name for response in dataset 2 |
... |
parameters passed to |
Converts genetic data to snpStats objects, generates p values via score tests, then runs coloc.abf
output of coloc.abf
Chris Wallace
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.