Description

Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel). Display statistics (mean, median, frequencies, incidences, etc.). Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.

Details

Main functions: compareGroups, compareSNPs, createTable, missingTable, export2latex, export2html, export2csv, export2pdf, export2md, export2word, export2xls, report, radiograph, cGroupsGUI, cGroupsWUI

Author(s)

Main functions: Isaac Subirana <isubirana<at>imim.es>, Joan Vila <jvila<at>imim.es>, H\'ector Sanz <hsrodenas<at>gmail.com>, Gavin Lucas <gavin.lucas<at>cleargenetics.com> and David Gim\'enez <dgimenez1<at>imim.es>

Web User Interface: Isaac Subirana <isubirana<at>imim.es>, Judith Pe\~nafiel <jpenafiel<at>imim.es>, Gavin Lucas <gavin.lucas<at>cleargenetics.com> and David Gim\'enez <dgimenez1<at>imim.es>

Maintainer: Isaac Subirana <isubirana<at>imim.es>

References

Isaac Subirana, Hector Sanz, Joan Vila (2014). Building Bivariate Tables: The compareGroups Package for R. Journal of Statistical Software, 57(12), 1-16. URL https://www.jstatsoft.org/v57/i12/.