dartR: gl.alf – R documentation

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gl.alf

Calculates allele frequency of the first and second allele for each loci #' A very simple function to report allele frequencies

Description

Calculates allele frequency of the first and second allele for each loci #' A very simple function to report allele frequencies

Usage

gl.alf(gl)

Arguments

`gl`	– a genlight object

Value

a simple data.frame with alf1, alf2

Author(s)

Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr)

Examples

#for the first 10 loci only
gl.alf(possums.gl[,1:10])
barplot(t(as.matrix(gl.alf(possums.gl[,1:10]))))

dartR

Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

v1.9.6

GPL-2

Authors

Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Peter J. Unmack [ctb], Oliver Berry [ctb], Lindsay V. Clark [ctb], Floriaan Devloo-Delva [ctb]

Initial release

2021-04-29