Define a new population in a genlight {adegenet} object on the basis of specified individuals
The script reassigns existing individuals to a new population and removes their existing population assignment
gl.define.pop(x, ind.list, new, verbose = NULL)
x |
– name of the genlight object containing SNP genotypes [required] |
ind.list |
– a list of individuals to be assigned to the new population [required] |
new |
– name of the new population |
verbose |
– verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log ; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity] |
The script returns a genlight object with the new population assignment.
A genlight object with the redefined population structure
Arthur Georges (Post to https://groups.google.com/d/forum/dartr)
gl <- gl.define.pop(testset.gl, ind.list=c("AA019073","AA004859"), new="newguys")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.