Represent a distance matrix as a heatmap
The script plots a heat map to represent the distances in the distance or dissimilarity matrix
gl.plot.heatmap(D, verbose = NULL)
D |
– name of the distance matrix or class fd object [required] |
verbose |
– verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log ; 3, progress and results summary; 5, full report [default 2] |
Arthur Georges (Post to https://groups.google.com/d/forum/dartr) as a wrapper for pheatmap by Raivo Kolde.
gl <- testset.gl[1:10,] D <- dist(as.matrix(gl),upper=TRUE,diag=TRUE) gl.plot.heatmap(D) D2 <- gl.dist.pop(testset.gl) gl.plot.heatmap(D2) D3 <- gl.fixed.diff(testset.gl) gl.plot.heatmap(D3)
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