Prints history of a genlight object
Prints history of a genlight object
gl.print.history(x = NULL, history = NULL)
x |
– a genlight object (with history [optional]) |
history |
– [optional] either a link to a history slot (gl\@other$history), or a vector indicating which part of the history of x is used [c(1,3,4) uses the first, third and forth entry from x\@other$history]. If no history is provided the complete history of x is used (recreating the identical object x). |
prints a table with all history records. Currently the style cannot be changed.
Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr)
dartfile <- system.file("extdata","testset_SNPs_2Row.csv", package="dartR")
metadata <- system.file("extdata","testset_metadata.csv", package="dartR")
gl <- gl.read.dart(dartfile, ind.metafile = metadata, probar=FALSE)
gl2 <- gl.filter.callrate(gl, method="loci", threshold=0.9)
gl3 <- gl.filter.callrate(gl2, method="ind", threshold=0.95)
#Now "replay" part of the history "onto" another genlight object
bc.fil <- gl.play.history(gl.compliance.check(bandicoot.gl),
history=gl3@other$history[c(2,3)], verbose=1)
gl.print.history(bc.fil)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.