dartR: gl.read.vcf – R documentation

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gl.read.vcf

Converts a vcf file into a genlight object

Description

This function needs package vcfR, please install it. The converted genlight object does not have individual metrics. You need to add them 'manually' to the other$ind.metrics slot.

Usage

gl.read.vcf(vcffile, verbose = 2)

Arguments

`vcffile`	– a vcf file (works only for diploid data)
`verbose`	set to 2

Value

A genlight object.

Author(s)

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)

Examples

## Not run: 
test <- gl.read.vcf("your_data.vcf")

## End(Not run)

dartR

Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

v1.9.6

GPL-2

Authors

Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Peter J. Unmack [ctb], Oliver Berry [ctb], Lindsay V. Clark [ctb], Floriaan Devloo-Delva [ctb]

Initial release

2021-04-29