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platy

Example data set as text file to be imported into a genlight object


Description

Check ?read.genetable in pacakge PopGenReport for details on the format.

Format

csv

Author(s)

Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr

Examples

library(PopGenReport)
read.csv( paste(.libPaths()[1],"/dartR/extdata/platy.csv",sep="" ))
platy <- read.genetable( paste(.libPaths()[1],"/dartR/extdata/platy.csv",
sep="" ), ind=1, pop=2, lat=3, long=4, other.min=5, other.max=6, oneColPerAll=FALSE,
sep="/")
platy.gl <- gi2gl(platy, parallel=FALSE)
df.loc <- data.frame(RepAvg = runif(nLoc(platy.gl)), CallRate = 1)
platy.gl@other$loc.metrics <- df.loc
gl.report.reproducibility(platy.gl)

dartR

Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

v1.9.6
GPL-2
Authors
Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Peter J. Unmack [ctb], Oliver Berry [ctb], Lindsay V. Clark [ctb], Floriaan Devloo-Delva [ctb]
Initial release
2021-04-29

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