Calculate Depth Space using Zonoid Depth
Calculates the representation of the training classes in depth space using zonoid depth.
depth.space.zonoid(data, cardinalities, seed = 0)
data |
Matrix containing training sample where each row is a d-dimensional object, and objects of each class are kept together so that the matrix can be thought of as containing blocks of objects representing classes. |
cardinalities |
Numerical vector of cardinalities of each class in |
seed |
the random seed. The default value |
The depth representation is calculated in the same way as in depth.zonoid, see 'References' for more information and details.
Matrix of objects, each object (row) is represented via its depths (columns) w.r.t. each of the classes of the training sample; order of the classes in columns corresponds to the one in the argument cardinalities.
Dyckerhoff, R., Koshevoy, G., and Mosler, K. (1996). Zonoid data depth: theory and computation. In: Prat A. (ed), COMPSTAT 1996. Proceedings in computational statistics, Physica-Verlag (Heidelberg), 235–240.
Koshevoy, G. and Mosler, K. (1997). Zonoid trimming for multivariate distributions Annals of Statistics 25 1998–2017.
Mosler, K. (2002). Multivariate dispersion, central regions and depth: the lift zonoid approach Springer (New York).
ddalpha.train and ddalpha.classify for application, depth.zonoid for calculation of zonoid depth.
# Generate a bivariate normal location-shift classification task
# containing 20 training objects
class1 <- mvrnorm(10, c(0,0),
matrix(c(1,1,1,4), nrow = 2, ncol = 2, byrow = TRUE))
class2 <- mvrnorm(10, c(2,2),
matrix(c(1,1,1,4), nrow = 2, ncol = 2, byrow = TRUE))
data <- rbind(class1, class2)
# Get depth space using zonoid depth
depth.space.zonoid(data, c(10, 10))
data <- getdata("hemophilia")
cardinalities = c(sum(data$gr == "normal"), sum(data$gr == "carrier"))
depth.space.zonoid(data[,1:2], cardinalities)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.