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as.phylo.dendrogram

Convert a dendrogram into phylo


Description

In the future I hope a more direct link will be made.

Usage

as.phylo.dendrogram(x, ...)

Arguments

x

a dendrogram

...

ignored.

Value

A phylo class object

See Also

Examples

## Not run: 

library(dendextend)
library(ape)
dend <- iris[1:30, -5] %>%
  dist() %>%
  hclust() %>%
  as.dendrogram()
dend2 <- as.phylo(dend)
plot(dend2, type = "fan")


# Also possible to with ggplot2 :)

library(dendextend)
library(ggplot2)
library(ggdendro)
dend <- iris[1:30, -5] %>%
  dist() %>%
  hclust() %>%
  as.dendrogram()
# Rectangular lines
ddata <- dend %>% dendro_data(type = "rectangle")
p <- ggplot(segment(ddata)) +
  geom_segment(aes(x = x, y = y, xend = xend, yend = yend)) +
  coord_flip() +
  scale_y_reverse(expand = c(0.2, 0)) + coord_polar(theta = "x")
p

## End(Not run)


# see: https://github.com/klutometis/roxygen/issues/796
#

dendextend

Extending 'dendrogram' Functionality in R

v1.15.1
GPL-2 | GPL-3
Authors
Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang)
Initial release
2021-05-08

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