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cor_FM_index

Correlation of FM_index for some k

Description

Calculates the FM_index Correlation for some k.

Usage

cor_FM_index(dend1, dend2, k, ...)

Arguments

dend1

a dendrogram.
dend2

a dendrogram.
k

an integer (number of clusters to cut the tree)
...

not used.

Value

A correlation value between 0 to 1 (almost identical clusters for some k)

See Also

Examples

set.seed(23235)
ss <- sample(1:150, 10)
hc1 <- iris[ss, -5] %>%
  dist() %>%
  hclust("com")
hc2 <- iris[ss, -5] %>%
  dist() %>%
  hclust("single")
dend1 <- as.dendrogram(hc1)
dend2 <- as.dendrogram(hc2)

cor_FM_index(dend1, dend2, k = 2)
cor_FM_index(dend1, dend2, k = 3)
cor_FM_index(dend1, dend2, k = 4)
dendextend

Extending 'dendrogram' Functionality in R

v1.15.1
GPL-2 | GPL-3
Authors
Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang)
Initial release
2021-05-08

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