Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

fix_members_attr.dendrogram

Fix members attr in a dendrogram


Description

Fix members attr in a dendrogram after (for example), the tree was pruned or manipulated.

Usage

fix_members_attr.dendrogram(dend, ...)

Arguments

dend

a dendrogram object

...

not used

Value

A dendrogram, after adjusting the members attr in all of its nodes.

Examples

# define dendrogram object to play with:
hc <- hclust(dist(USArrests[1:3, ]), "ave")
dend <- as.dendrogram(hc)
# plot(dend)
# prune one leaf
dend[[2]] <- dend[[2]][[1]]
# plot(dend)
dend # but it is NO LONGER true that it has 3 members total!
fix_members_attr.dendrogram(dend) # it now knows it has only 2 members :)

hc <- hclust(dist(USArrests[1:3, ]), "ave")
dend <- as.dendrogram(hc)

identical(prune_leaf(dend, "Alaska"), fix_members_attr.dendrogram(prune_leaf(dend, "Alaska")))
str(unclass(prune_leaf(dend, "Alaska")))
str(unclass(fix_members_attr.dendrogram(prune_leaf(dend, "Alaska"))))

dendextend

Extending 'dendrogram' Functionality in R

v1.15.1
GPL-2 | GPL-3
Authors
Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang)
Initial release
2021-05-08

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.