Highlight distint edges in a tree (compared to another one)
Highlight distint edges in a tree (compared to another one) by changing the branches' color, line width, or line type.
This function enables this feature in dend_diff and tanglegram
highlight_distinct_edges(dend, ...) ## S3 method for class 'dendrogram' highlight_distinct_edges( dend, dend2, value = 2, edgePar = c("col", "lty", "lwd"), ... ) ## S3 method for class 'dendlist' highlight_distinct_edges(dend, ..., which = c(1L, 2L))
dend |
a dendrogram or dendlist to find unique edges in (to highlight) |
... |
Ignored. |
dend2 |
a dendrogram to compare with |
value |
a new value scalar for the edgePar attribute. |
edgePar |
a character indicating the value inside edgePar to adjust. Can be either "col", "lty", or "lwd". |
which |
an integer vector indicating, in the case "dend" is a dendlist, on which of the trees should the modification be performed. If missing - the change will be performed on all of objects in the dendlist. |
A dendrogram with modified edges - the distinct ones are changed (color, line width, or line type)
x <- 1:5 %>% dist() %>% hclust() %>% as.dendrogram() y <- set(x, "labels", 5:1) distinct_edges(x, y) distinct_edges(y, x) par(mfrow = c(1, 2)) plot(highlight_distinct_edges(x, y)) plot(y) # tanglegram(highlight_distinct_edges(x, y),y) # dend_diff(x, y) ## Not run: # using highlight_distinct_edges combined with dendlist and set # to clearly highlight "stable" branches. data(iris) ss <- c(1:5, 51:55, 101:105) iris1 <- iris[ss, -5] %>% dist() %>% hclust(method = "single") %>% as.dendrogram() iris2 <- iris[ss, -5] %>% dist() %>% hclust(method = "complete") %>% as.dendrogram() iris12 <- dendlist(iris1, iris2) %>% set("branches_k_color", k = 3) %>% set("branches_lwd", 3) %>% highlight_distinct_edges(value = 1, edgePar = "lwd") iris12 %>% untangle(method = "step2side") %>% tanglegram( sub = "Iris dataset", main_left = "'single' clustering", main_right = "'complete' clustering" ) ## End(Not run)
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