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match_order_by_labels

Adjust the order of one dendrogram based on another (using labels)


Description

Takes one dendrogram and adjusts its order leaves valeus based on the order of another dendrogram. The values are matached based on the labels of the two dendrograms.

This allows for faster entanglement running time, since we can be sure that the leaves order is just as using their labels.

Usage

match_order_by_labels(
  dend_change,
  dend_template,
  check_that_labels_match = TRUE
)

Arguments

dend_change

tree object (dendrogram)

dend_template

tree object (dendrogram)

check_that_labels_match

logical (TRUE). If to check that the labels in the two dendrogram match. (if they do not, the function aborts)

Value

Returns dend_change after adjusting its order values to be like dend_template.

See Also

Examples

## Not run: 

dend <- USArrests[1:4, ] %>%
  dist() %>%
  hclust() %>%
  as.dendrogram()
order.dendrogram(dend) #  c(4L, 3L, 1L, 2L)

dend_changed <- dend
order.dendrogram(dend_changed) <- 1:4
order.dendrogram(dend_changed) # c(1:4)

# now let's fix the order of the new object to be as it was:
dend_changed <- match_order_by_labels(dend_changed, dend)
# these two are now the same:
order.dendrogram(dend_changed)
order.dendrogram(dend)

## End(Not run)

dendextend

Extending 'dendrogram' Functionality in R

v1.15.1
GPL-2 | GPL-3
Authors
Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang)
Initial release
2021-05-08

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