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diffusionMap

Diffusion Map

Implements diffusion map method of data parametrization, including creation and visualization of diffusion map, clustering with diffusion K-means and regression using adaptive regression model. Richards (2009) <doi:10.1088/0004-637X/691/1/32>.

Functions (9)

Chainlink

Chainlink toy clustering data set

adapreg

Adaptive Regression

adapreg.m

Adaptive Regression

annulus

Annulus toy data set

diffuse

Compute diffusion map coordinates from pair-wise distances.

diffusionKmeans

Diffusion K-means

distortionMin

Distortion Minimization via K-means

epsilonCompute

Compute default diffusion map epsilon.

nystrom

Perform Nystrom Extension to estimate diffusion coordinates of data.

diffusionMap

Diffusion Map

v1.2.0

GPL-3

Authors

Joseph Richards [aut] (joeyrichar), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)

Initial release

diffusionMap

Functions (9)

diffusionMap

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