Used to plot a single parameter
This function creates a pdf figure of plots showing the results of the imageJ analysis for resistance (radius from the disk, RAD), sensitivity (slope) and tolerance (fraction of growth above RAD, FoG).
oneParamPlot(projectName, type, param = "RAD20", ymin = 0, ymax = 100, width = 6, height = 4, xlabels = "line", xlabAngle = NA, order = NA, orderFactor = "line", overwrite = TRUE, savePDF = TRUE, popUp = TRUE, barplot = TRUE)
projectName |
the short name to be used for the project |
type |
specify whether the dataset to use is a dataframe with all data ("df") or an aggregated dataframe ("ag") |
param |
what parameter to plot (supported: "RAD20", "RAD50", "RAD80", "FoG20", "FoG50", "FoG80", "slope"), default = "RAD20" |
ymin |
a numeric value indicating the minimum y value plotted in each plot |
ymax |
a numeric value indicating the maximum y value plotted in each plot |
width |
a numeric value indicating the width of the pdf file generated |
height |
a numeric value indicating the height of the pdf file generated |
xlabels |
either a vector containing the desired x-axis labels, or a single value indicating the column name that contains the values to use (likely either the 'line' column or one of the type columns), default = "line". |
xlabAngle |
indicates whether to print the x axis labels on a angle, if a number is provided this will be the angle used. The defauilt is not to plot on an angle, default = NA. |
order |
can be either "factor" or "custom". If custom, supply a numberial vector the same length as the dataframe to indicate the desired order. If factor, supply the column name in |
orderFactor |
if |
overwrite |
a logical value indicating whether to overwrite existing figures created on the same day for the same project name |
savePDF |
a logical value indicating whether to save a PDF file or open a new quartz window. Defaults to TRUE (saves a pdf file). |
popUp |
a logical value indicating whether to pop up the figure after it has been created |
barplot |
whether to plot values as a barplot (barplot = TRUE) or dotplot (barplot = FALSE), default = TRUE. Only possible when |
Basic parameter plotting functions to plot a single parameter. Input can be the dataframe from either createDataframe type="df" or from aggregateData type=="ag".
Either a pdf figure figure (projectName_RAD-FoG.pdf) saved to the 'figures' directory or a figure on screen
twoParamPlot for a similar figure with two parameters or threeParamPlot for a similar figure with three parameters
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.