Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Also calculates F-statistics from Weir and Cockerham (1984).
Various plotting features are provided, as well as Chi-square tests of
genetic heterogeneity.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.

A Comprehensive, General Purpose Population Genetics Analysis
Package

package-ubuntu-20.04-r-4.0.5#cran#diveRsity-1.9.90

<p><code>SNPs</code> depicts a typical input layout for the function <code>snp2gp</code>. Data can be passed to this function as either a <code>dataframe</code>, or a file name for a tab delimited file with the same structure as <code>SNPs</code>.
</p>

package-ubuntu-20.04-r-4.0.5#cran#diveRsity-1.9.90#docs#SNPs

SNPs

Description

Usage

Format

diveRsity

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