Similarity coefficients for co-dominant diploid genenotype data
Calculation of similarity coefficients for co-dominant genotype data, following Kosman and Leonard, (2005).
divSimCo(infile = NULL, loci = FALSE, boots = 0)
infile |
Specifying the name of the ‘genepop’ (Rousset, 2008) file from which the statistics are to be calculated This file can be in either the 3 digit of 2 digit format. See http://genepop.curtin.edu.au/help_input.html for detail on the genepop file format. |
loci |
A logical argument, specifying whether similarity matrices for each locus should be calculated. If |
boots |
An integer, specifying the number of bootstrapped matrices to generate. Loci are resampled with replacement. |
Similarity coefficients are calculated according to Kosman and Leonard, (2005). Multi-locus values are calculated from all loci without missing data.
A list containing either one (global) if loci = FALSE, or two elements (global and loci) if loci = TRUE.
global |
A pairwise matrix of multilocus similarity coefficients. |
loci |
A list of pairwise matrices of locus similarity coefficients. |
Kevin Keenan
Kosman E, Leonard K (2005) Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species. Molecular ecology, 14, 415-424.
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