Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Also calculates F-statistics from Weir and Cockerham (1984).
Various plotting features are provided, as well as Chi-square tests of
genetic heterogeneity.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.

A Comprehensive, General Purpose Population Genetics Analysis
Package

package-ubuntu-20.04-r-4.0.5#cran#diveRsity-1.9.90

<p>C++ level calculation of total and sub-population heterozygosity</p>

<table summary="R argblock">
<tr valign="top">
<td><code>af</code></td>
<td>
<p>af returned by internal function, <code>statCalc</code></p>
</td>
</tr>
<tr valign="top">
<td><code>sHarm</code></td>
<td>
<p>Harmonic sample size per locus</p>
</td>
</tr>
<tr valign="top">
<td><code>pw</code></td>
<td>
<p>Integer matrix indicating pairwise indexes</p>
</td>
</tr>
</table>

package-ubuntu-20.04-r-4.0.5#cran#diveRsity-1.9.90#docs#pwHCalc

`af`	af returned by internal function, `statCalc`
`sHarm`	Harmonic sample size per locus
`pw`	Integer matrix indicating pairwise indexes

pwHCalc

Description

Usage

Arguments

diveRsity

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