Residuals of a Mantel correlogram
Extracts residuals from an S3 object of class mgram
(only relevant for objects created by pmgram{}
).
## S3 method for class 'mgram' residuals(object, ...)
object |
an object of class |
... |
additional arguments |
vector of residuals.
Sarah Goslee
#### Partial pmgram example # generate a simple surface # with complex nonlinear spatial pattern x <- matrix(1:10, nrow=10, ncol=10, byrow=FALSE) y <- matrix(1:10, nrow=10, ncol=10, byrow=TRUE) # create z1 and z2 as functions of x, y # and scale them to [0, 1] z1 <- x + 3*y z2 <- y - cos(x) z1 <- (z1 - min(z1)) / (max(z1) - min(z1)) z2 <- (z2 - min(z2)) / (max(z2) - min(z2)) z12 <- (z1 + z2*2)/3 # analyze the pattern of z across space z1 <- as.vector(z1) z2 <- as.vector(z2) z12 <- as.vector(z12) z1.d <- dist(z1) z2.d <- dist(z2) z12.d <- dist(z12) space <- cbind(as.vector(x), as.vector(y)) space.d <- dist(space) # take partial correlogram of z12 given z1 z.z1 <- pmgram(z12.d, space.d, z2.d, nperm=0, resids=TRUE) summary(residuals(z.z1))
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