ecospat

Spatial Ecology Miscellaneous Methods

Calculates a range of community evaluation metrics based on different thresholding techniques.

Evaluates community predictions directly on the probabilities (i.e., threshold independent)

Creates a DataSplitTable for usage in ecospat.ccv.modeling.

Runs indivudual species distribuion models with SDMs or ESMs

Community Evaluation

Pairwise co-occurrence Analysis with calculation of the C-score index.

Ensamble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs

Ensamble of Small Models: Projects Calibrated ESMs Into New Space Or Time.

Ensamble of Small Models: Calibration of Simple Bivariate Models

Ensamble of Small Models: Projects Simple Bivariate Models Into New Space Or Time

Variable contribution in ESM

Produce response plots for ESMs

Thresholds for Ensamble of Small Models

Prediction Mean

SESAM Probability Ranking Rule

Calculate An Adjusted D2

Generate Binary Models

Calculate Boyce Index

Calculate Phylogenetic Diversity Measures

Calibration And Evaluation Dataset

A climate analogy setection tool for the modeling of species distributions

Species Co-Occurrences

Cohen's Kappa

Constrained Co-Occurrence Analysis.

Correlation Plot

GBM Cross Validation

GLM Cross Validation

Maxent Cross Validation

RandomForest Cross Validation

Dynamic Occurrence Densities Grid

Make Data Frame

Mantel Correlogram

Delineation of the distribution's margin and its uncertainty

Maximum Kappa

Maximum TSS

Maxent Variable Importance

Minimum Dispersal Routes)

MESS

Model Evaluation For A Given Threshold Value

Minimal Predicted Area

Niche Expansion, Stability, and Unfilling

Projection of niche dynamic indices to the Geography

Niche Equivalency Test

Calculate Niche Overlap

Niche Similarity Test

Projection of Occurrence Densities to the Geography

Number Of Predictors

Species Occurrences Desaggregation

Extract occupied patches of a species in geographic space.)

GLM Permutation Function

Plot Variables Contribution

Plot Kappa

Plot MESS

Plot Niche

Niche Categories and Species Density

Plot Overlap Test

Plot True skill statistic (TSS)

Sample Pseudo-Absences

Quantification of the range size of a species using habitat suitability maps and IUCN criteria)

Reclassifying grids function

Random Ecologically Stratified Sampling of propotional numbers

Random Ecologically Stratified Sampling of equal numbers

Sample Environmental Variables

Draw Centroid Arrows

Test Data For The Ecospat package

Test Environmental Rasters for The Ecospat package

Test Data For The ecospat.mdr function

Test Data For The Niche Overlap Analysis

Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species

Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species

Test Tree For The Ecospat package

Variation Partitioning For GLM Or GAM