ridgeplot
ridgeline plot for GSEA result
ridgeplot( x, showCategory = 30, fill = "p.adjust", core_enrichment = TRUE, label_format = 30 ) ## S4 method for signature 'gseaResult' ridgeplot( x, showCategory = 30, fill = "p.adjust", core_enrichment = TRUE, label_format = 30 ) ridgeplot.gseaResult( x, showCategory = 30, fill = "p.adjust", core_enrichment = TRUE, label_format = 30 )
x |
gseaResult object |
showCategory |
number of categories for plotting |
fill |
one of "pvalue", "p.adjust", "qvalue" |
core_enrichment |
whether only using core_enriched genes |
label_format |
a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters |
ggplot object
Guangchuang Yu
library(DOSE) data(geneList) x <- gseDO(geneList) ridgeplot(x)
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