geometry: distmeshnd – R documentation

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distmeshnd

A simple mesh generator for non-convex regions in n-D space

Description

An unstructured simplex requires a choice of mesh points (vertex nodes) and a triangulation. This is a simple and short algorithm that improves the quality of a mesh by relocating the mesh points according to a relaxation scheme of forces in a truss structure. The topology of the truss is reset using Delaunay triangulation. A (sufficiently smooth) user supplied signed distance function (fd) indicates if a given node is inside or outside the region. Points outside the region are projected back to the boundary.

Usage

distmeshnd(fdist, fh, h, box, pfix = array(dim = c(0, ncol(box))), ...,
  ptol = 0.001, ttol = 0.1, deltat = 0.1, geps = 0.1 * h,
  deps = sqrt(.Machine$double.eps) * h)

Arguments

`fdist`	Vectorized signed distance function, for example `mesh.dsphere`, accepting an `m`-by-`n` matrix, where `m` is arbitrary, as the first argument.
`fh`	Vectorized function, for example `mesh.hunif`, that returns desired edge length as a function of position. Accepts an `m`-by-`n` matrix, where `n` is arbitrary, as its first argument.
`h`	Initial distance between mesh nodes.
`box`	`2`-by-`n` matrix that specifies the bounding box. (See distmesh2d for an example.)
`pfix`	`nfix`-by-2 matrix with fixed node positions.
`...`	parameters that are passed to `fdist` and `fh`
`ptol`	Algorithm stops when all node movements are smaller than `dptol`
`ttol`	Controls how far the points can move (relatively) before a retriangulation with `delaunayn`.
`deltat`	Size of the time step in Euler's method.
`geps`	Tolerance in the geometry evaluations.
`deps`	Stepsize Δ x in numerical derivative computation for distance function.

Details

This is an implementation of original Matlab software of Per-Olof Persson.

Excerpt (modified) from the reference below:

‘The algorithm is based on a mechanical analogy between a triangular mesh and a n-D truss structure. In the physical model, the edges of the Delaunay triangles of a set of points correspond to bars of a truss. Each bar has a force-displacement relationship F(L,L0) depending on its current length L and its unextended length L0.’

‘External forces on the structure come at the boundaries, on which external forces have normal orientations. These external forces are just large enough to prevent nodes from moving outside the boundary. The position of the nodes are the unknowns, and are found by solving for a static force equilibrium. The hope is that (when fh = function(p) return(rep(1,nrow(p)))), the lengths of all the bars at equilibrium will be nearly equal, giving a well-shaped triangular mesh.’

See the references below for all details. Also, see the comments in the source file of distmesh2d.

Value

m-by-n matrix with node positions.

Wishlist

Implement in C/Fortran
Translate other functions of the Matlab package

Author(s)

Raoul Grasman; translated from original Matlab sources of Per-Olof Persson.

References

http://persson.berkeley.edu/distmesh/

P.-O. Persson, G. Strang, A Simple Mesh Generator in MATLAB. SIAM Review, Volume 46 (2), pp. 329-345, June 2004

Examples

## Not run: 
# examples distmeshnd
require(rgl)

fd = function(p, ...) sqrt((p^2)%*%c(1,1,1)) - 1
     # also predefined as `mesh.dsphere'
fh = function(p,...)  rep(1,nrow(p))
     # also predefined as `mesh.hunif'
bbox = matrix(c(-1,1),2,3)
p = distmeshnd(fd,fh,0.2,bbox, maxiter=100)
    # this may take a while:
    # press Esc to get result of current iteration

## End(Not run)

geometry

Mesh Generation and Surface Tessellation

v0.4.5

GPL (>= 3)

Authors

Jean-Romain Roussel [cph, ctb] (wrote tsearch function with QuadTrees), C. B. Barber [cph], Kai Habel [cph, aut], Raoul Grasman [cph, aut], Robert B. Gramacy [cph, aut], Pavlo Mozharovskyi [cph, aut], David C. Sterratt [cph, aut, cre] (<https://orcid.org/0000-0001-9092-9099>)

Initial release

2019-12-02