ggm: grMAT – R documentation

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Documentation

ggm

grMAT

Graph to adjacency matrix

Description

grMAT generates the associated adjacency matrix to a given graph.

Usage

grMAT(agr)

Arguments

agr

A graph that can be a graphNEL or an igraph object or a vector of length 3e, where e is the number of edges of the graph, that is a sequence of triples (type, node1label, node2label). The type of edge can be "a" (arrows from node1 to node2), "b" (arcs), and "l" (lines).

Value

A matrix that consists 4 different integers as an ij-element: 0 for a missing edge between i and j, 1 for an arrow from i to j, 10 for a full line between i and j, and 100 for a bi-directed arrow between i and j. These numbers are added to be associated with multiple edges of different types. The matrix is symmetric w.r.t full lines and bi-directed arrows.

Author(s)

Kayvan Sadeghi

Examples

## Generating the adjacency matrix from a vector
exvec <-c ('b',1,2,'b',1,14,'a',9,8,'l',9,11,'a',10,8,
           'a',11,2,'a',11,10,'a',12,1,'b',12,14,'a',13,10,'a',13,12)
grMAT(exvec)

ggm

Graphical Markov Models with Mixed Graphs

v2.5

GPL-2

Authors

Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi

Initial release

2020-02-014