ggm: isAcyclic – R documentation

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Documentation

ggm

isAcyclic

Graph queries

Description

Checks if a given graph is acyclic.

Usage

isAcyclic(amat, method = 2)

Arguments

`amat`	a square Boolean matrix with dimnames, the adjacency matrix of a graph.
`method`	an integer 1 or 2 specifying the method used. If `method=1` the function calls the function `clusters` in package `igraph` to find the strong components: two nodes v and w are in the same strong component iff there are directed paths from v to w and from w to v. If `method=2` the function uses the `ggm` function `transClos`. Method 1 is faster.

Value

a logical value, TRUE if the graph is acyclic and FALSE otherwise.

Author(s)

David Edwards, Giovanni M. Marchetti

References

Aho, A.V., Hopcroft, J.E. \& Ullman, J.D. (1983). Data structures and algorithms. Reading: Addison-Wesley.

Examples

## A cyclic graph
d <- matrix(0,3,3)
rownames(d) <- colnames(d) <- c("x", "y", "z")
d["x","y"] <- d["y", "z"] <- d["z", "x"] <- 1
## Test if the graph is acyclic
isAcyclic(d)
isAcyclic(d, method = 1)

ggm

Graphical Markov Models with Mixed Graphs

v2.5

GPL-2

Authors

Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi

Initial release

2020-02-014