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ggpubr

'ggplot2' Based Publication Ready Plots

The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.

Functions (71)

add_summary

Add Summary Statistics onto a ggplot.

annotate_figure

Annotate Arranged Figure

as_ggplot

Storing grid.arrange() arrangeGrob() and plots

axis_scale

Change Axis Scale: log2, log10 and more

background_image

Add Background Image to ggplot2

bgcolor

Change ggplot Panel Background Color

border

Set ggplot Panel Border Line

compare_means

Comparison of Means

create_aes

Create Aes Mapping from a List

desc_statby

Descriptive statistics by groups

diff_express

Differential gene expression analysis results

facet

Facet a ggplot into Multiple Panels

font

Change the Appearance of Titles and Axis Labels

gene_citation

Gene Citation Index

geom_bracket

Add Brackets with Labels to a GGPlot

geom_exec

Execute ggplot2 functions

geom_signif

geom_signif exported from ggsignif package

get_breaks

Easy Break Creation for Numeric Axes

get_legend

Extract Legends from a ggplot object

get_palette

Generate Color Palettes

ggadd

Add Summary Statistics or a Geom onto a ggplot

ggarrange

Arrange Multiple ggplots

ggballoonplot

Ballon plot

ggbarplot

Bar plot

ggboxplot

Box plot

ggdensity

Density plot

ggdonutchart

Donut chart

ggdotchart

Cleveland's Dot Plots

ggdotplot

Dot plot

ggecdf

Empirical cumulative density function

ggerrorplot

Visualizing Error

ggexport

Export ggplots

gghistogram

Histogram plot

ggline

Line plot

ggmaplot

MA-plot from means and log fold changes

ggpaired

Plot Paired Data

ggpar

Graphical parameters

ggparagraph

Draw a Paragraph of Text

ggpie

Pie chart

ggpubr_args

ggpubr General Arguments Description

ggqqplot

QQ Plots

ggscatter

Scatter plot

ggscatterhist

Scatter Plot with Marginal Histograms

ggstripchart

Stripcharts

ggsummarystats

GGPLOT with Summary Stats Table Under the Plot

ggtext

Text

ggtexttable

Draw a Textual Table

ggviolin

Violin plot

gradient_color

Set Gradient Color

grids

Add Grids to a ggplot

pipe

Pipe operator

reexports

Objects exported from other packages

rotate

Rotate a ggplot Horizontally

rotate_axis_text

Rotate Axes Text

rremove

Remove a ggplot Component

set_palette

Set Color Palette

show_line_types

Line types available in R

show_point_shapes

Point shapes available in R

stat_central_tendency

Add Central Tendency Measures to a GGPLot

stat_chull

Plot convex hull of a set of points

stat_compare_means

Add Mean Comparison P-values to a ggplot

stat_conf_ellipse

Plot confidence ellipses.

stat_cor

Add Correlation Coefficients with P-values to a Scatter Plot

stat_mean

Draw group mean points

stat_overlay_normal_density

Overlay Normal Density Plot

stat_pvalue_manual

Add Manually P-values to a ggplot

stat_regline_equation

Add Regression Line Equation and R-Square to a GGPLOT.

stat_stars

Add Stars to a Scatter Plot

text_grob

Create a Text Graphical object

theme_pubr

Publication ready theme

theme_transparent

Create a ggplot with Transparent Background

ggpubr

'ggplot2' Based Publication Ready Plots

v0.4.0
GPL-2
Authors
Alboukadel Kassambara [aut, cre]
Initial release
2020-06-27

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