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pal_igv

Integrative Genomics Viewer (IGV) Color Palettes


Description

Color palettes based on the colors used by Integrative Genomics Viewer (IGV).

Usage

pal_igv(palette = c("default", "alternating"), alpha = 1)

Arguments

palette

Palette type. There are two available options: "default" (51-color palette); "alternating" (2-color palette).

alpha

Transparency level, a real number in (0, 1]. See alpha in rgb for details.

Author(s)

Nan Xiao <me@nanx.me> | <https://nanx.me>

References

James T. Robinson, Helga Thorvaldsd\'ottir, Wendy Winckler, Mitchell Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov. Integrative Genomics Viewer. Nature Biotechnology 29, 24–26 (2011).

Examples

library("scales")
show_col(pal_igv("default")(51))
show_col(pal_igv("alternating")(2))

ggsci

Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

v2.9
GPL-3 | file LICENSE
Authors
Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>), Miaozhu Li [ctb]
Initial release

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