ggsci: rgb_gsea – R documentation

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rgb_gsea

The GSEA GenePattern Color Palettes

Color palette inspired by the colors used in the heatmaps plotted by GSEA GenePattern.

rgb_gsea(palette = c("default"), n = 12, alpha = 1, reverse = FALSE)

`palette`	Palette type. Currently there is one available option: `"default"` (continuous palette with 12 base colors).
`n`	Number of individual colors to be generated.
`alpha`	Transparency level, a real number in (0, 1]. See `alpha` in `rgb` for details.
`reverse`	Logical. Should the order of the colors be reversed?

The 12 base colors used in this palette are derived from this document.

library("scales")
show_col(pal_gsea("default")(12))
show_col(pal_gsea("default", n = 30, alpha = 0.6, reverse = TRUE)(30))

Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

v2.9

GPL-3 | file LICENSE

Authors

Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>), Miaozhu Li [ctb]

Initial release