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scale_gsea

The GSEA GenePattern Color Scales


Description

See pal_gsea for details.

Usage

scale_color_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

scale_colour_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

scale_fill_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

Arguments

palette

Palette type. Currently there is one available option: "default" (continuous palette with 12 base colors).

alpha

Transparency level, a real number in (0, 1]. See alpha in rgb for details.

reverse

Logical. Should the order of the colors be reversed?

...

additional parameters for discrete_scale

Author(s)

Nan Xiao <me@nanx.me> | <https://nanx.me>

Examples

library("ggplot2")
library("reshape2")
data("mtcars")

cor = cor(mtcars)
cor_melt = melt(cor)

ggplot(cor_melt,
       aes(x = Var1, y = Var2, fill = value)) +
  geom_tile(colour = "black", size = 0.3) +
  theme_bw() + scale_fill_gsea()

ggsci

Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

v2.9
GPL-3 | file LICENSE
Authors
Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>), Miaozhu Li [ctb]
Initial release

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