gllvm

Corrected Akaike information criterion and number of observations

Analysis Of Deviance for gllvm

Plot covariate coefficients and confidence intervals

Confidence intervals for model parameters

Extract latent variables

Extract prediction errors for latent variables from gllvm object

Extract residual correlations from gllvm object

Extract residual covariance matrix from gllvm object

Generalized Linear Latent Variable Models

Log-likelihood of gllvm

Microbial community data

Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.

Plot latent variables from gllvm model

Plot Diagnostics for an gllvm Object

Predict Method for gllvm Fits

Predict latent variables for gllvm Fits

Plot random slope coefficients

Dunn-Smyth residuals for gllvm model

Standard errors for gllvm model

Simulated bacteria data

Simulate data from gllvm fit

Summarizing gllvm model fits

Returns variance-covariance matrix of coefficients in a GLLVM.