glmmTMB: fitTMB – R documentation

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fitTMB

Optimize a TMB model and package results

Description

This function (called internally by glmmTMB) runs the actual model optimization, after all of the appropriate structures have been set up. It can be useful to run glmmTMB with doFit=TRUE, adjust the components as required, and then finish the fitting process with fitTMB (however, it is the user's responsibility to make sure that any modifications create an internally consistent final fitted object).

Usage

fitTMB(TMBStruc)

Arguments

TMBStruc

a list contain

Examples

m0 <- glmmTMB(count ~ mined + (1|site),
             family=poisson, data=Salamanders, doFit=FALSE)
names(m0)
fitTMB(m0)

glmmTMB

Generalized Linear Mixed Models using Template Model Builder

v1.0.2.1

AGPL-3

Authors

Arni Magnusson [aut] (<https://orcid.org/0000-0003-2769-6741>), Hans Skaug [aut], Anders Nielsen [aut] (<https://orcid.org/0000-0001-9683-9262>), Casper Berg [aut] (<https://orcid.org/0000-0002-3812-5269>), Kasper Kristensen [aut], Martin Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>), Koen van Bentham [aut], Ben Bolker [aut] (<https://orcid.org/0000-0002-2127-0443>), Nafis Sadat [ctb] (<https://orcid.org/0000-0001-5715-616X>), Daniel Lüdecke [ctb] (<https://orcid.org/0000-0002-8895-3206>), Russ Lenth [ctb], Joseph O'Brien [ctb] (<https://orcid.org/0000-0001-9851-5077>), Mollie Brooks [aut, cre] (<https://orcid.org/0000-0001-6963-8326>)

Initial release