hierfstat: boot.ppfst – R documentation

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boot.ppfst

Performs bootstrapping over loci of pairwise Fst

Performs bootstrapping over loci of pairwise Fst

boot.ppfst(dat=dat,nboot=100,quant=c(0.025,0.975),diploid=TRUE,...)

`dat`	a genetic data frame
`nboot`	number of bootstraps
`quant`	the quantiles for bootstrapped ci
`diploid`	whether data are from diploid organisms
`...`	further arguments to pass to the function

`call`	call to the function
`ll`	lower limit ci
`ul`	upper limit ci
`vc.per.loc`	for each pair of population, the variance components per locus

data(gtrunchier)
x<-boot.ppfst(gtrunchier[,-2])
x$ll
x$ul

Estimation and Tests of Hierarchical F-Statistics

v0.5-10

GPL (>= 2)

Authors

Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]

Initial release

2021-11-16