Converts genind objects from adegenet into a hierfstat data frame
Converts genind objects from adegenet into a hierfstat data frame
genind2hierfstat(dat,pop=NULL)
dat |
a genind object |
pop |
a vector containing the population to which each individual belongs. If pop=NULL, pop taken from slot pop of the genind object |
a data frame with nloci+1 columns and ninds rows. The first column contains the population identifier, the following the genotypes at each locus
## Not run: library(adegenet) data(nancycats) genind2hierfstat(nancycats) basic.stats(nancycats) genet.dist(nancycats) data(H3N2) basic.stats(genind2hierfstat(H3N2,pop=rep(1,dim(H3N2@tab)[1])),diploid=FALSE) ## End(Not run)
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